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Frequently Asked Questions about jPHYDIT


  1. How can I import Genbank sequence entries?
  2. Some files are too large to be opened. Can I retrieve data selectively from those files?
  3. Can jPHYDIT execute external programs?

Q: How can I import Genbank sequence entries?    Top

A: Just copy Genbank HTML page then paste it into the Tag frame.

  1. Press 'Ctrl + A' to select all contents in the GenBank Page.
  2. Press 'Ctrl + C' to copy the selected contents.
  3. Press 'Ctrl + V' to paste into the Tag frame(Tag frame must be activated at that time!!).
  4. Selecte the format of the contents to be pasted.



             
       1.  Ctrl + A        2.  Ctrl + C
      
             
       3.  Ctrl + V        4.  Select format

Q: Some files are too large to be opened. Can I retrieve data selectively from those files?    Top

A: Both jPHYDIT file and fasta file could be scanned for retrieving data selectively.

  1. Go to Data->Import menu and select format of a file to be scanned.
  2. Choose file.
  3. Input entry name or strain name that you want to retrieve.

Q: Can jPHYDIT execute external programs?    Top

A: TreeView, Mega3.0 et al. can be executed.

  1. Go to File->Option. There are two tabs for configuring options.
  2. Choose Program tab.
  3. Input path for each program.
    ¡ØCaution : Some external programs are platform dependent. Please install compatible program with your operating system.

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